WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VC5.3b.1 Sequence Name  VC5.3b.1
Length (nt)  4631   Chromosome Location  V: 7075787-7081545
Chromosome . Primary Identifier  V Chromosome Location . Start  7075787
Chromosome Location . End  7081545 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VC5.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003786 npa-1 VC5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VC5.3b VC5.3b 1200   V: 7079860-7080966

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3b.1 7075787 7081545 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon186698   219   V: 7075787-7076005 Caenorhabditis elegans
Exon186704   35   V: 7076351-7076385 Caenorhabditis elegans
Exon186714   1109   V: 7076495-7077603 Caenorhabditis elegans
Exon186723   372   V: 7077659-7078030 Caenorhabditis elegans
Exon186731   372   V: 7078076-7078447 Caenorhabditis elegans
Exon186738   372   V: 7078490-7078861 Caenorhabditis elegans
Exon186744   375   V: 7078907-7079281 Caenorhabditis elegans
Exon186752   378   V: 7079328-7079705 Caenorhabditis elegans
Exon186760   1215   V: 7079752-7080966 Caenorhabditis elegans
Exon186775   184   V: 7081362-7081545 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3b.1 7075787 7081545 1

1 Sequence

Length
4631

1 Sequence Ontology Term

Identifier Name Description
transcript