WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VC5.3a.1 Sequence Name  VC5.3a.1
Length (nt)  4533   Chromosome Location  V: 7075877-7081580
Chromosome . Primary Identifier  V Chromosome Location . Start  7075877
Chromosome Location . End  7081580 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VC5.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003786 npa-1 VC5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VC5.3a VC5.3a 4323   V: 7075961-7076005

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3a.1 7075877 7081580 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon186699   129   V: 7075877-7076005 Caenorhabditis elegans
Exon186703   35   V: 7076351-7076385 Caenorhabditis elegans
Exon186709   694   V: 7076495-7077188 Caenorhabditis elegans
Exon186715   372   V: 7077232-7077603 Caenorhabditis elegans
Exon186722   372   V: 7077659-7078030 Caenorhabditis elegans
Exon186730   372   V: 7078076-7078447 Caenorhabditis elegans
Exon186737   372   V: 7078490-7078861 Caenorhabditis elegans
Exon186743   375   V: 7078907-7079281 Caenorhabditis elegans
Exon186751   378   V: 7079328-7079705 Caenorhabditis elegans
Exon186759   1215   V: 7079752-7080966 Caenorhabditis elegans
Exon186776   219   V: 7081362-7081580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3a.1 7075877 7081580 1

1 Sequence

Length
4533

1 Sequence Ontology Term

Identifier Name Description
transcript