WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01C4.1.1 Sequence Name  T01C4.1.1
Length (nt)  4628   Chromosome Location  V: 7123658-7128961
Chromosome . Primary Identifier  V Chromosome Location . Start  7123658
Chromosome Location . End  7128961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01C4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020141 lmd-5 T01C4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01C4.1 T01C4.1 4557   V: 7123658-7123842

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01C4.1.1 7123658 7128961 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon186828   185   V: 7123658-7123842 Caenorhabditis elegans
Exon186829   452   V: 7123892-7124343 Caenorhabditis elegans
Exon186830   122   V: 7124385-7124506 Caenorhabditis elegans
Exon186831   519   V: 7124550-7125068 Caenorhabditis elegans
Exon186832   267   V: 7125114-7125380 Caenorhabditis elegans
Exon186833   203   V: 7125426-7125628 Caenorhabditis elegans
Exon186834   135   V: 7125836-7125970 Caenorhabditis elegans
Exon186835   427   V: 7126018-7126444 Caenorhabditis elegans
Exon186836   321   V: 7126490-7126810 Caenorhabditis elegans
Exon186837   638   V: 7126855-7127492 Caenorhabditis elegans
Exon186838   1165   V: 7127556-7128720 Caenorhabditis elegans
Exon186839   194   V: 7128768-7128961 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01C4.1.1 7123658 7128961 1

1 Sequence

Length
4628

1 Sequence Ontology Term

Identifier Name Description
transcript