WormMine: Gene WBGene00045145

• WormBase Gene ID: WBGene00045145
• Gene Name: F10D2.13
• Sequence Name: F10D2.13
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; clk-1; and alh-4 based on RNA-seq and microarray studies. Is affected by Tunicamycin and multi-walled carbon nanotube based on RNA-seq studies.
• Biotype: SO:0001268
• Genetic Position: :±
• Length (nt): 142

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00045145

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F10D2.13	F10D2.13	142	V: 7142717-7142858

Other

0 CDSs

7 RNAi Result

• WBRNAi00018597
• WBRNAi00018607
• WBRNAi00030765
• WBRNAi00023313
• WBRNAi00023589
• WBRNAi00023823
• WBRNAi00024111

8 Allele

• gk963301
• gk963553
• gk964259
• gk964351
• gk963850
• gk962860
• gk238727
• gk238726

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00045145
• Start: 7142717
• End: 7142858
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

11 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer6)_upregulated
	Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.	Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off.	WBPaper00045774:clk-1_downregulated
	Genes that showed significantly decreased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.	Transcripts with false discovery rate-corrected p-values < 0.05 and fold change > 2 were defined as differentially expressed.	WBPaper00049377:MWCNT_downregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	Transcripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer39)_upregulated
	Transcripts that showed significantly increased expression in alh-4(hj221) deletion allele comparing to in N2.	N.A.	WBPaper00061653:alh-4(hj221)_upregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Transcripts that physically bind VGLN-1 protein, according to RNA sequencing on immunoprecipitation using GFP-Trap A proteins, by comparing results on Pvgln-1::vgln-1::gfp (kuIs102) (strain MH4920) with Pvgln-1::gfp (kuIs103) (strain MH4922)	DESeq2	WBPaper00051311:VGLN-1-interacting
	Transcripts that showed significantly increased expression after 4 hours of treatment by 50 ub per ml tunicamycin at L4 larva stage, in RtcB(null) animals.	Fold change > 1.75	WBPaper00045971:tunicamycin_upregulated_RtcB(null)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00045145
• Start: 7142717
• End: 7142858
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 142

1 Sequence Ontology Term