WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023235 Gene Name  C13A2.8
Sequence Name  ? C13A2.8 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 and ilc-17.1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 802
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023235

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

23 Allele

Public Name
gk963301
gk963553
gk964259
gk964351
gk963850
gk962860
WBVar01974066
gk238988
WBVar00211260
tm11369
WBVar00587300
gk582598
gk389130
gk377486
gk745939
gk595695
gk354485
gk885531
gk745938
gk411772
gk650525
gk422268
WBVar01741125

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023235 7264576 7265377 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_7265378..7266320   943 V: 7265378-7266320 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023235 7264576 7265377 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
802

1 Sequence Ontology Term