Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F10G2.10a.1 | F10G2.10a.1 |
618
 |
V: 7322215-7323790 |
| Transcript:F10G2.10b.1 | F10G2.10b.1 |
423
|
V: 7323253-7323790 |
Other
2 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F10G2.10a | F10G2.10a |
618
|
V: 7322215-7322352 |
| CDS:F10G2.10b | F10G2.10b |
423
|
V: 7323253-7323288 |
53 Allele
| Public Name |
|---|
| gk963301 |
| gk963553 |
| gk964259 |
| gk964351 |
| gk963850 |
| gk962860 |
| WBVar01862556 |
| gkDf36 |
| WBVar01588593 |
| WBVar01588594 |
| WBVar01588591 |
| WBVar01588592 |
| WBVar01974093 |
| WBVar01974090 |
| WBVar01974092 |
| WBVar01974091 |
| gk239102 |
| gk239103 |
| gk239104 |
| gk963773 |
| WBVar00211389 |
| WBVar00211388 |
| WBVar00211376 |
| WBVar00211375 |
| WBVar00211374 |
| WBVar00211373 |
| WBVar00211372 |
| WBVar00211371 |
| WBVar00211370 |
| WBVar00211369 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00235324 | 7322215 | 7323790 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_7323791..7324037 | 247 | V: 7323791-7324037 | Caenorhabditis elegans |
7 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. | N.A. | WBPaper00026929:sir-2.1_overexpression_regulated | |
| Transcripts that showed differential expression between 24 and 26 hours post hatching L2d and dauer committed larvae of daf-9(dh, triggered by the dafachronic acid (DA) growth hormone6). Cluster 2 genes' expression gradually increased into dauer. | Benjamini Hochberg corrected q-value < 0.01. | WBPaper00053388:dauer_regulated_Cluster2 | |
| Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:daf-2(e1370)_upregulated_neuron | |
| Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. | DESeq2, FDR < 0.05, fold change > 2. | WBPaper00066978:daf-16(mu86)_upregulated_neuron | |
| Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. | DESeq2, fold change > 2, FDR < 0.05. | WBPaper00066485:ogt-1(ok1474)_downregulated_neuron | |
| Simulated microgravity. The clinostat rotated theculture bags at 1 rad per s (~10 RPM) for four days, which is the measured time to reach L4 and adulthood at 21C in CeHR medium. | Transcripts that showed significantly decreased expression in N2 animals that lived in simulated microgravity condition comparing to N2 animals that lived in ground control condition. | DESeq2 version 1.16.1, FDR < 0.05 and fold change > 4. | WBPaper00065215:microgravity_downregulated_DESeq2 |
| Transcripts that showed significantly decreased expression in lpd-3(ok2138) comparing to in N2 animals. | DESeq2, fold change > 4, FDR < 0.05. | WBPaper00064661:lpd-3(ok2138)_downregulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr2002411 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |