WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00006091 Gene Name  str-24
Sequence Name  ? R13D7.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by 2 and 4-dinitroanisole based on microarray studies. Biotype  SO:0000336
Genetic Position  V :0.748899 ±3.4e-05 Length (nt)  ? 1051
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00006091

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

22 Allele

Public Name
gk963301
WBVar02060242
gk963553
gk964259
gk964351
gk963850
gk962860
gk964449
gk964450
gk239269
h10410
WBVar01741194
WBVar01741193
WBVar02031931
WBVar00211884
gk570616
gk774710
gk504385
gk338541
gk623814
gk783850
gk557306

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00006091 7404821 7405871 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_7403911..7404820   910 V: 7403911-7404820 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression after 24 hour exposure to 2,4-Dinitroanisole (DNAN). Multivariate permutation tests with random variance model implemented in BRB-Array Tools version 4.5 were performed to infer differentially expressed genes (DEGs). One thousand random permutations were computed per chemical class (i.e., a group of 16 arrays or samples). The confidence level of false discovery rate assessment was set at 80%, and the maximum allowed portion of false-positive genes was 10%. WBPaper00055899:2,4-Dinitroanisole_regulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00006091 7404821 7405871 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1051

1 Sequence Ontology Term