WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005312 Gene Name  srh-91
Sequence Name  ? F25E5.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 and ogt-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :0.751774± Length (nt)  ? 1200
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005312

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

20 Allele

Public Name
gk963301
WBVar02060260
gk963553
gk964259
gk964351
gk963850
gk962860
WBVar01862650
tm12831
WBVar01460667
gk960788
WBVar00211954
gk735445
WBVar00211953
gk699573
WBVar00211952
gk459112
WBVar00211951
gk469463
gk471882

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005312 7461750 7462949 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_7460999..7461749   751 V: 7460999-7461749 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. WBPaper00060811:L1_vs_adult_upregulated_neural
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005312 7461750 7462949 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1200

1 Sequence Ontology Term