WormMine: Gene WBGene00005431

• WormBase Gene ID: WBGene00005431
• Gene Name: srh-221
• Sequence Name: C04F2.2
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in ADLL based on single-cell RNA-seq studies. Is affected by several genes including etr-1; dpy-21; and ilc-17.1 based on RNA-seq studies. Is affected by nitroguanidine based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :0.753184 ±6e-05
• Length (nt): 1307

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005431

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

24 Allele

• gk963301
• gk963553
• gk964259
• gk964351
• gk963850
• gk962860
• WBVar01862678
• WBVar01589044
• WBVar01589045
• gk963384
• WBVar01974180
• gk239474
• gk239475
• gk239476
• gk239477
• tm8955
• WBVar00587759
• gk405774
• gk733802
• gk702028
• gk789236
• gk2989
• gk595241
• gk392468

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005431
• Start: 7499652
• End: 7500958
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_7499129..7499651
• Length (nt): 523
• Chromosome Location: V: 7499129-7499651
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly altered expression after 24 hour exposure to nitroguanidine (NQ).	Multivariate permutation tests with random variance model implemented in BRB-Array Tools version 4.5 were performed to infer differentially expressed genes (DEGs). One thousand random permutations were computed per chemical class (i.e., a group of 16 arrays or samples). The confidence level of false discovery rate assessment was set at 80%, and the maximum allowed portion of false-positive genes was 10%.	WBPaper00055899:nitroguanidine_regulated
	Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-2(e1370)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:daf-16(mu86)_upregulated_neuron
	Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_downregulated
	Single-cell RNA-Seq cell group 81_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:81_0
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005431
• Start: 7499652
• End: 7500958
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1307

1 Sequence Ontology Term