WormMine: Gene WBGene00005473

• WormBase Gene ID: WBGene00005473
• Gene Name: srh-267
• Sequence Name: C04F2.5
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by etr-1 and qui-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :0.753697 ±0.000146
• Length (nt): 1293

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005473

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

24 Allele

• gk963301
• gk963553
• gk964259
• gk964351
• gk963850
• gk962860
• WBVar01862682
• gk963384
• gk239483
• gk239484
• gk239485
• tm8955
• ttTi37424
• ttTi37416
• gk603576
• gk818832
• gk731031
• gk414598
• gk551244
• gk364508
• gk459523
• WBVar00211994
• WBVar00211993
• WBVar00211995

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005473
• Start: 7504653
• End: 7505945
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_7504372..7504652
• Length (nt): 281
• Chromosome Location: V: 7504372-7504652
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
Feeding for 4 hours after L1 arrest.	Transcripts that showed significantly decreased expression after 4 hours of feeding of starvation-induced arrested L1 rsks-1(ok1255) animals, comparing to animals continue to starve.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00067518:food_downregulated_rsks-1(ok1255)
	Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage.	tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05.	WBPaper00062520:qui-1(db104)_downregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005473
• Start: 7504653
• End: 7505945
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1293

1 Sequence Ontology Term