WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54F6.13b.1 Sequence Name  C54F6.13b.1
Length (nt)  2217   Chromosome Location  V: 7540894-7544021
Chromosome . Primary Identifier  V Chromosome Location . Start  7540894
Chromosome Location . End  7544021 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54F6.13b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003731 nhx-3 C54F6.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54F6.13b C54F6.13b 1956   V: 7540959-7541123

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13b.1 7540894 7544021 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon187879   230   V: 7540894-7541123 Caenorhabditis elegans
Exon187882   147   V: 7541331-7541477 Caenorhabditis elegans
Exon187885   238   V: 7541526-7541763 Caenorhabditis elegans
Exon187888   579   V: 7541834-7542412 Caenorhabditis elegans
Exon187891   102   V: 7542541-7542642 Caenorhabditis elegans
Exon187894   155   V: 7542691-7542845 Caenorhabditis elegans
Exon187897   290   V: 7542916-7543205 Caenorhabditis elegans
Exon187900   168   V: 7543362-7543529 Caenorhabditis elegans
Exon187903   82   V: 7543655-7543736 Caenorhabditis elegans
Exon187904   226   V: 7543796-7544021 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13b.1 7540894 7544021 -1

1 Sequence

Length
2217

1 Sequence Ontology Term

Identifier Name Description
transcript