WormMine: Gene WBGene00005534

• WormBase Gene ID: WBGene00005534
• Gene Name: sri-22
• Sequence Name: F19F10.2
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in M.vrpaapap; anal depressor muscle; and mu_int_L based on single-cell RNA-seq studies. Is affected by ham-3 and daf-2 based on RNA-seq and microarray studies. Is affected by Colistin based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :0.802993 ±0.002685
• Length (nt): 1578

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005534

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

27 Allele

• gk963301
• WBVar02060273
• gk963553
• gk964259
• gk964351
• gk963850
• gk962860
• WBVar01862717
• WBVar01862716
• gk239583
• gk239584
• ok888
• WBVar00212041
• WBVar00212040
• gk359227
• gk839646
• gk874274
• WBVar01460706
• gk658096
• gk428281
• gk623815
• gk397372
• gk626208
• gk759751
• gk923231
• gk340181
• gk344724

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005534
• Start: 7555810
• End: 7557387
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_7557388..7557469
• Length (nt): 82
• Chromosome Location: V: 7557388-7557469
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_upregulated
	Transcripts that showed significantly decreased expression in ham-3(RNAi) comparing to in control animals.	Cuffdiff was used to identify differentially expressed genes.	WBPaper00049018:ham-3(RNAi)_downregulated
	Genes up-regulated after 24 hour exposure to colistin.	Gene lists were created using a cutoff P-value of < 0.05, 2-fold change.	WBPaper00045673:colistin_upregulated
	Single-cell RNA-Seq cell group 38_0 expressed in muscle.	scVI 0.6.0	WBPaper00065841:38_0
	Single-cell RNA-Seq cell group 38_3 expressed in muscle.	scVI 0.6.0	WBPaper00065841:38_3
	Single-cell RNA-Seq cell group 38_1 expressed in muscle.	scVI 0.6.0	WBPaper00065841:38_1
	Single-cell RNA-Seq cell group 38_2 expressed in muscle.	scVI 0.6.0	WBPaper00065841:38_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005534
• Start: 7555810
• End: 7557387
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1578

1 Sequence Ontology Term