WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271707 Gene Name  ZK105.14
Sequence Name  ? ZK105.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF19 and Domain of unknown function (DUF19). Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 865
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271707

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZK105.14.1 ZK105.14.1 684   V: 7721181-7722045
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK105.14 ZK105.14 684   V: 7721181-7721519

1 RNAi Result

WormBase ID
WBRNAi00021781

13 Allele

Public Name
gk963301
gk963553
gk964259
gk964351
gk963850
gk962860
WBVar02123530
WBVar00212968
WBVar00212967
gk552886
gk936859
gk857586
ttTi39060

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00271707 7721181 7722045 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_7717730..7721180   3451 V: 7717730-7721180 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00271707 7721181 7722045 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
865

1 Sequence Ontology Term