WormMine: Gene WBGene00023340

• WormBase Gene ID: WBGene00023340
• Gene Name: T05B11.5
• Sequence Name: T05B11.5
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including glh-4; glh-1; and pgl-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 1106

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00023340

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

29 Allele

• gk963301
• gk963553
• gk964259
• gk964351
• gk963850
• gk962860
• WBVar01862838
• gk964486
• gk964062
• gk964469
• gk239996
• gk239997
• gk239998
• ttTi20004
• ttTi20009
• WBVar00213052
• WBVar00213053
• WBVar00213054
• WBVar00213055
• WBVar00213056
• WBVar00213051
• gk658590
• gk370089
• gk600009
• gk485255
• gk871065
• gk790965
• gk526041
• WBVar02054744

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00023340
• Start: 7756749
• End: 7757854
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_7757855..7760473
• Length (nt): 2619
• Chromosome Location: V: 7757855-7760473
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
	Transcripts that showed significantly increased expression in pgl-1(ct131) animals (isolated from SS0002[pgl-1(ct131)him-3(e1147)], comparing to in control animals SS1174, at 1-day post L4 adult hermaphrodite stage.	DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2.	WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00023340
• Start: 7756749
• End: 7757854
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1106

1 Sequence Ontology Term