WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.4a.1 Sequence Name  F52E1.4a.1
Length (nt)  3138   Chromosome Location  V: 8387356-8391947
Chromosome . Primary Identifier  V Chromosome Location . Start  8387356
Chromosome Location . End  8391947 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001534 gcy-7 F52E1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.4a F52E1.4a 3138   V: 8387356-8387403

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52E1.4a.1 8387356 8391947 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189793   48   V: 8387356-8387403 Caenorhabditis elegans
Exon189794   191   V: 8387452-8387642 Caenorhabditis elegans
Exon189797   110   V: 8387753-8387862 Caenorhabditis elegans
Exon189800   248   V: 8387938-8388185 Caenorhabditis elegans
Exon189803   112   V: 8388229-8388340 Caenorhabditis elegans
Exon189806   126   V: 8388386-8388511 Caenorhabditis elegans
Exon189809   113   V: 8388555-8388667 Caenorhabditis elegans
Exon189812   120   V: 8388757-8388876 Caenorhabditis elegans
Exon189815   264   V: 8388977-8389240 Caenorhabditis elegans
Exon189818   102   V: 8389293-8389394 Caenorhabditis elegans
Exon189821   180   V: 8389441-8389620 Caenorhabditis elegans
Exon189824   213   V: 8389670-8389882 Caenorhabditis elegans
Exon189827   120   V: 8389930-8390049 Caenorhabditis elegans
Exon189830   57   V: 8390095-8390151 Caenorhabditis elegans
Exon189833   145   V: 8390199-8390343 Caenorhabditis elegans
Exon189836   239   V: 8390527-8390765 Caenorhabditis elegans
Exon189839   236   V: 8390809-8391044 Caenorhabditis elegans
Exon189842   193   V: 8391390-8391582 Caenorhabditis elegans
Exon189847   321   V: 8391627-8391947 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52E1.4a.1 8387356 8391947 1

1 Sequence

Length
3138

1 Sequence Ontology Term

Identifier Name Description
transcript