WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.4c.1 Sequence Name  F52E1.4c.1
Length (nt)  3354   Chromosome Location  V: 8387356-8392324
Chromosome . Primary Identifier  V Chromosome Location . Start  8387356
Chromosome Location . End  8392324 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001534 gcy-7 F52E1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.4c F52E1.4c 3354   V: 8387356-8387403

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52E1.4c.1 8387356 8392324 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189826   48   V: 8387356-8387403 Caenorhabditis elegans
Exon189830   191   V: 8387452-8387642 Caenorhabditis elegans
Exon189833   110   V: 8387753-8387862 Caenorhabditis elegans
Exon189836   248   V: 8387938-8388185 Caenorhabditis elegans
Exon189839   112   V: 8388229-8388340 Caenorhabditis elegans
Exon189842   126   V: 8388386-8388511 Caenorhabditis elegans
Exon189845   113   V: 8388555-8388667 Caenorhabditis elegans
Exon189848   120   V: 8388757-8388876 Caenorhabditis elegans
Exon189851   264   V: 8388977-8389240 Caenorhabditis elegans
Exon189854   102   V: 8389293-8389394 Caenorhabditis elegans
Exon189857   180   V: 8389441-8389620 Caenorhabditis elegans
Exon189860   213   V: 8389670-8389882 Caenorhabditis elegans
Exon189863   120   V: 8389930-8390049 Caenorhabditis elegans
Exon189866   57   V: 8390095-8390151 Caenorhabditis elegans
Exon189869   145   V: 8390199-8390343 Caenorhabditis elegans
Exon189872   239   V: 8390527-8390765 Caenorhabditis elegans
Exon189875   236   V: 8390809-8391044 Caenorhabditis elegans
Exon189878   193   V: 8391390-8391582 Caenorhabditis elegans
Exon189880   274   V: 8391627-8391900 Caenorhabditis elegans
Exon189883   188   V: 8392023-8392210 Caenorhabditis elegans
Exon189884   75   V: 8392250-8392324 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52E1.4c.1 8387356 8392324 1

1 Sequence

Length
3354

1 Sequence Ontology Term

Identifier Name Description
transcript