WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13a.1 Sequence Name  F52E1.13a.1
Length (nt)  3053   Chromosome Location  V: 8415648-8438409
Chromosome . Primary Identifier  V Chromosome Location . Start  8415648
Chromosome Location . End  8438409 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13a F52E1.13a 2523   V: 8416178-8416293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13a.1 8415648 8438409 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189870   646   V: 8415648-8416293 Caenorhabditis elegans
Exon189876   110   V: 8416348-8416457 Caenorhabditis elegans
Exon189882   269   V: 8416512-8416780 Caenorhabditis elegans
Exon189888   167   V: 8417734-8417900 Caenorhabditis elegans
Exon189900   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189906   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189912   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189918   164   V: 8429200-8429363 Caenorhabditis elegans
Exon189924   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189930   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189936   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189942   371   V: 8433045-8433415 Caenorhabditis elegans
Exon189948   124   V: 8433463-8433586 Caenorhabditis elegans
Exon189954   283   V: 8433638-8433920 Caenorhabditis elegans
Exon189960   226   V: 8434082-8434307 Caenorhabditis elegans
Exon189966   63   V: 8438347-8438409 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13a.1 8415648 8438409 -1

1 Sequence

Length
3053

1 Sequence Ontology Term

Identifier Name Description
transcript