WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13f.1 Sequence Name  F52E1.13f.1
Length (nt)  2951   Chromosome Location  V: 8415687-8434307
Chromosome . Primary Identifier  V Chromosome Location . Start  8415687
Chromosome Location . End  8434307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13f F52E1.13f 2460   V: 8416178-8416293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13f.1 8415687 8434307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189873   607   V: 8415687-8416293 Caenorhabditis elegans
Exon189880   110   V: 8416348-8416457 Caenorhabditis elegans
Exon189886   269   V: 8416512-8416780 Caenorhabditis elegans
Exon189892   167   V: 8417734-8417900 Caenorhabditis elegans
Exon189904   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189910   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189916   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189921   164   V: 8429200-8429363 Caenorhabditis elegans
Exon189928   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189934   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189940   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189946   371   V: 8433045-8433415 Caenorhabditis elegans
Exon189952   124   V: 8433463-8433586 Caenorhabditis elegans
Exon189958   283   V: 8433638-8433920 Caenorhabditis elegans
Exon189964   226   V: 8434082-8434307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13f.1 8415687 8434307 -1

1 Sequence

Length
2951

1 Sequence Ontology Term

Identifier Name Description
transcript