WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13g.1 Sequence Name  F52E1.13g.1
Length (nt)  2957   Chromosome Location  V: 8415687-8434307
Chromosome . Primary Identifier  V Chromosome Location . Start  8415687
Chromosome Location . End  8434307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13g F52E1.13g 2466   V: 8416178-8416293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13g.1 8415687 8434307 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189874   607   V: 8415687-8416293 Caenorhabditis elegans
Exon189881   110   V: 8416348-8416457 Caenorhabditis elegans
Exon189887   269   V: 8416512-8416780 Caenorhabditis elegans
Exon189893   167   V: 8417734-8417900 Caenorhabditis elegans
Exon189905   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189911   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189917   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189923   170   V: 8429200-8429369 Caenorhabditis elegans
Exon189929   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189935   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189941   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189947   371   V: 8433045-8433415 Caenorhabditis elegans
Exon189953   124   V: 8433463-8433586 Caenorhabditis elegans
Exon189959   283   V: 8433638-8433920 Caenorhabditis elegans
Exon189965   226   V: 8434082-8434307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13g.1 8415687 8434307 -1

1 Sequence

Length
2957

1 Sequence Ontology Term

Identifier Name Description
transcript