WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13c.1 Sequence Name  F52E1.13c.1
Length (nt)  3019   Chromosome Location  V: 8415688-8444806
Chromosome . Primary Identifier  V Chromosome Location . Start  8415688
Chromosome Location . End  8444806 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13c F52E1.13c 2493   V: 8416178-8416293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13c.1 8415688 8444806 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189875   606   V: 8415688-8416293 Caenorhabditis elegans
Exon189878   110   V: 8416348-8416457 Caenorhabditis elegans
Exon189884   269   V: 8416512-8416780 Caenorhabditis elegans
Exon189890   167   V: 8417734-8417900 Caenorhabditis elegans
Exon189901   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189907   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189913   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189919   164   V: 8429200-8429363 Caenorhabditis elegans
Exon189925   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189931   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189937   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189943   371   V: 8433045-8433415 Caenorhabditis elegans
Exon189949   124   V: 8433463-8433586 Caenorhabditis elegans
Exon189955   283   V: 8433638-8433920 Caenorhabditis elegans
Exon189961   226   V: 8434082-8434307 Caenorhabditis elegans
Exon189970   69   V: 8444738-8444806 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13c.1 8415688 8444806 -1

1 Sequence

Length
3019

1 Sequence Ontology Term

Identifier Name Description
transcript