WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13c.1 Sequence Name  F52E1.13c.1
Length (nt)  3019   Chromosome Location  V: 8415688-8444806
Chromosome . Primary Identifier  V Chromosome Location . Start  8415688
Chromosome Location . End  8444806 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13c F52E1.13c 2493   V: 8416178-8416293

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13c.1 8415688 8444806 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189930   606   V: 8415688-8416293 Caenorhabditis elegans
Exon189933   110   V: 8416348-8416457 Caenorhabditis elegans
Exon189939   269   V: 8416512-8416780 Caenorhabditis elegans
Exon189945   167   V: 8417734-8417900 Caenorhabditis elegans
Exon189956   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189962   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189968   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189974   164   V: 8429200-8429363 Caenorhabditis elegans
Exon189980   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189986   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189992   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189998   371   V: 8433045-8433415 Caenorhabditis elegans
Exon190004   124   V: 8433463-8433586 Caenorhabditis elegans
Exon190010   283   V: 8433638-8433920 Caenorhabditis elegans
Exon190016   226   V: 8434082-8434307 Caenorhabditis elegans
Exon190025   69   V: 8444738-8444806 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13c.1 8415688 8444806 -1

1 Sequence

Length
3019

1 Sequence Ontology Term

Identifier Name Description
transcript