WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E1.13d.1 Sequence Name  F52E1.13d.1
Length (nt)  1938   Chromosome Location  V: 8422660-8438409
Chromosome . Primary Identifier  V Chromosome Location . Start  8422660
Chromosome Location . End  8438409 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E1.13d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018700 lmd-3 F52E1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E1.13d F52E1.13d 1938   V: 8422660-8422736

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13d.1 8422660 8438409 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon189897   77   V: 8422660-8422736 Caenorhabditis elegans
Exon189902   106   V: 8427534-8427639 Caenorhabditis elegans
Exon189908   76   V: 8428282-8428357 Caenorhabditis elegans
Exon189914   70   V: 8428549-8428618 Caenorhabditis elegans
Exon189920   164   V: 8429200-8429363 Caenorhabditis elegans
Exon189926   119   V: 8429809-8429927 Caenorhabditis elegans
Exon189932   102   V: 8430501-8430602 Caenorhabditis elegans
Exon189938   157   V: 8432845-8433001 Caenorhabditis elegans
Exon189944   371   V: 8433045-8433415 Caenorhabditis elegans
Exon189950   124   V: 8433463-8433586 Caenorhabditis elegans
Exon189956   283   V: 8433638-8433920 Caenorhabditis elegans
Exon189962   226   V: 8434082-8434307 Caenorhabditis elegans
Exon189967   63   V: 8438347-8438409 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E1.13d.1 8422660 8438409 -1

1 Sequence

Length
1938

1 Sequence Ontology Term

Identifier Name Description
transcript