WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28A12.1.1 Sequence Name  F28A12.1.1
Length (nt)  1940   Chromosome Location  V: 8638221-8640650
Chromosome . Primary Identifier  V Chromosome Location . Start  8638221
Chromosome Location . End  8640650 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28A12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017879 acd-4 F28A12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28A12.1 F28A12.1 1842   V: 8638254-8638374

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28A12.1.1 8638221 8640650 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon190505   154   V: 8638221-8638374 Caenorhabditis elegans
Exon190506   155   V: 8638444-8638598 Caenorhabditis elegans
Exon190507   199   V: 8638644-8638842 Caenorhabditis elegans
Exon190508   431   V: 8638891-8639321 Caenorhabditis elegans
Exon190509   166   V: 8639375-8639540 Caenorhabditis elegans
Exon190510   72   V: 8639592-8639663 Caenorhabditis elegans
Exon190511   154   V: 8639711-8639864 Caenorhabditis elegans
Exon190512   92   V: 8639910-8640001 Caenorhabditis elegans
Exon190513   146   V: 8640044-8640189 Caenorhabditis elegans
Exon190514   165   V: 8640233-8640397 Caenorhabditis elegans
Exon190515   206   V: 8640445-8640650 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28A12.1.1 8638221 8640650 1

1 Sequence

Length
1940

1 Sequence Ontology Term

Identifier Name Description
transcript