WormMine: Gene WBGene00219644

• WormBase Gene ID: WBGene00219644
• Gene Name: linc-69
• Sequence Name: B0507.16
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in excretory canal and excretory cell based on single-cell RNA-seq studies. Is affected by several genes including etr-1; ints-5; and glp-1 based on RNA-seq studies. Is affected by atracurium based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: V :1.58776±
• Length (nt): 1047

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219644

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:B0507.16	B0507.16	355	V: 8766699-8767745

Other

0 CDSs

1 RNAi Result

• WBRNAi00001785

19 Allele

• gk963301
• gk964351
• gk962860
• gk964052
• gk963442
• gk963441
• WBVar01863126
• h3419
• gk589492
• gk242058
• gk242059
• gk242060
• gk607244
• gk396532
• gk476259
• gk376714
• gk434474
• gk682272
• h16002

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219644
• Start: 8766699
• End: 8767745
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_8766039..8766698
• Length (nt): 660
• Chromosome Location: V: 8766039-8766698
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals.	Fold change > 2, FDR < 0.01.	WBPaper00065993:glp-1(e2141)_upregulated
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-5(RNAi)_upregulated
	Transcripts that showed significantly decreased expression after 24 hours of treatment by 50 uM atracurium.	Differential expression was assessed using an empirical Bayes moderated t test within limma's linear model framework including the precision weights estimated by voom. Resulting p-values were corrected for multiple testing using the Benjamini-Hochberg false discovery rate. Fold change > 2, p-value < 0.05.	WBPaper00061636:atracurium_downregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA
	Single-cell RNA-Seq cell group 79_1 expressed in excretory.	scVI 0.6.0	WBPaper00065841:79_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219644
• Start: 8766699
• End: 8767745
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1047

1 Sequence Ontology Term