WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196212 Gene Name  F07B7.15
Sequence Name  ? F07B7.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 based on microarray studies. Is affected by Tunicamycin and Cry5B based on microarray studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 162
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196212

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F07B7.15 F07B7.15 162   V: 8853307-8853468
 

Other

0 CDSs

0 RNAi Result

20 Allele

Public Name
gk963301
gk964351
gk962860
gk964052
gk963442
gk963441
WBVar02120517
WBVar02123531
WBVar02122252
gk963265
gk962557
WBVar02122969
WBVar02122970
gk963298
gk962631
gk964108
WBVar02121630
gk963242
gk964477
gk963733

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00196212 8853307 8853468 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_8853469..8853669   201 V: 8853469-8853669 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals fed with JM103 bacteria producing Cry5B, comparing to control animals fed with JM103. ANOVA, p-value < 0.05. WBPaper00056167:Cry5B_upregulated
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts that showed significantly increased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00196212 8853307 8853468 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
162

1 Sequence Ontology Term