WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200244 Gene Name  K06C4.23
Sequence Name  ? K06C4.23 Organism  Caenorhabditis elegans
Automated Description  Is affected by Tunicamycin and Cry5B based on microarray studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 372
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200244

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K06C4.23 K06C4.23 372   V: 8895340-8895711
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963301
gk964351
gk962860
gk964052
gk963442
gk963441

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00200244 8895340 8895711 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_8895712..8895764   53 V: 8895712-8895764 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals fed with JM103 bacteria producing Cry5B, comparing to control animals fed with JM103. ANOVA, p-value < 0.05. WBPaper00056167:Cry5B_upregulated
  Transcripts that showed significantly increased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00200244 8895340 8895711 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
372

1 Sequence Ontology Term