WormMine: Gene WBGene00194993

• WormBase Gene ID: WBGene00194993
• Gene Name: T27E4.11
• Sequence Name: T27E4.11
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in germ line based on RNA-seq studies. Is affected by several genes including ints-2; ints-1; and dlc-1 based on RNA-seq studies.
• Biotype: SO:0001268
• Genetic Position: :±
• Length (nt): 164

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00194993

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T27E4.11	T27E4.11	164	V: 9086858-9087021

Other

0 CDSs

12 RNAi Result

• WBRNAi00067731
• WBRNAi00067741
• WBRNAi00068005
• WBRNAi00106381
• WBRNAi00019332
• WBRNAi00022286
• WBRNAi00076719
• WBRNAi00076128
• WBRNAi00063634
• WBRNAi00063169
• WBRNAi00070147
• WBRNAi00103549

9 Allele

• gk963301
• gk964351
• gk962860
• gk964052
• gk963442
• gk963441
• gk963163
• gk555791
• ok577

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00194993
• Start: 9086858
• End: 9087021
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_9082861..9086857
• Length (nt): 3997
• Chromosome Location: V: 9082861-9086857
• Organism: Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in sftb-1(cer6) deletion homozygous comparing to to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer6)_upregulated
	Transcripts enriched in germline by comparing dissected germline tissue with dissected intestine tissue, both injected with empty RNAi vector.	Genes were determined germline-enriched if the lowest expression value (log2(FPKM+1)) observed in the germline empty vector samples was at least 2-fold higher than the highest expression value observed in the intestine empty vector samples.	WBPaper00051039:germline_enriched
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	Transcripts that showed significantly increased expression in strain CER276 sftb1(cer39[Q552P, R643C,K718E]) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2	WBPaper00058725:sftb-1(cer39)_upregulated
	Transcripts that showed significantly increased expression in ints-11(RNAi) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-11(RNAi)_upregulated
Bacteria: C.neoformans strain H99	Transcripts that showed significantly increased expression after infection by C. neoformans H99.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:C.neoformans_H99_upregulated
	Transcripts interacting with LAG-1 at L4 larva stage in germline ChIP-Seq analysis.	edgeR fold change >= 2, FDR <= 0.05.	WBPaper00059440:LAG-1_interacting_germline
	Transcripts that showed significantly increased expression in ints-2(RNAi) comparing to in N2.	DESeq2 and edgeR.	WBPaper00056284:ints-2(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00194993
• Start: 9086858
• End: 9087021
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 164

1 Sequence Ontology Term