WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00271820 Gene Name  T18H9.11
Sequence Name  ? T18H9.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1; pals-22; and pals-17 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 2745
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00271820

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

39 Allele

Public Name
gk963301
gk964351
gk962860
gk964052
gk963442
gk963441
WBVar01863243
WBVar01974485
gk242856
gk242855
gk242858
gk242857
gk242860
gk242859
gk242861
WBVar02024133
tm13179
gk350256
gk859636
gk921850
gk927847
gk815005
gk858807
gk429809
gk475785
WBVar01417301
gk545511
WBVar00588757
gk574063
WBVar01742597

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00271820 9199865 9202609 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_9202610..9203076   467 V: 9202610-9203076 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in pals-22(jy3) comparing to in N2 animals. limma-voom, fold change > 2, FDR < 0.05 WBPaper00064532:pals-22(jy3)_downregulated
  Transcripts that showed significantly decreased expression in pals-17(syb3980) comparing to in N2 animals at young adult stage. Differential expression analyses were performed using limma-voom in Galaxy, adj p <= 0.05, logFC > 2 WBPaper00065984:pals-17(syb3980)_downregulated
  Transcripts that showed significantly increased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00271820 9199865 9202609 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2745

1 Sequence Ontology Term