Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:ZK682.11 | ZK682.11 |
350
 |
V: 9283328-9283677 |
Other
13 Allele
| Public Name |
|---|
| gk963301 |
| gk964351 |
| gk962860 |
| gk964052 |
| gk963442 |
| gk963441 |
| gk963151 |
| gk963152 |
| WBVar00588775 |
| gk853759 |
| gk537725 |
| gk756301 |
| gk896879 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00200044 | 9283328 | 9283677 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrV_9283678..9284123 | 446 | V: 9283678-9284123 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. | edgeR, FDR < 0.001, fold change > 2. | WBPaper00055565:AVK_enriched | |
| Transcripts that showed significantly increased expression in met-2(n4256) L1 animals comparing to in N2 control. | DeSeq2 (v.2.11.40.2), p < 0.05. | WBPaper00060886:met-2(n4256)_upregulated | |
| Transcripts that showed significantly decreased expression in nfki-1(cer1) animals at L1 larva stage, comparing to in N2 animals. | Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. | WBPaper00060445:nfki-1(cer1)_downregulated_L1 |