WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00202023 Gene Name  F44A2.11
Sequence Name  ? F44A2.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by camt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 128
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00202023

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F44A2.11 F44A2.11 128   V: 9314912-9315039
 

Other

0 CDSs

0 RNAi Result

11 Allele

Public Name
gk963301
gk964351
gk962860
gk964052
gk963442
gk963441
WBVar01863269
WBVar01863267
WBVar01863268
WBVar02090877
gk906338

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00202023 9314912 9315039 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_9310927..9314911   3985 V: 9310927-9314911 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00202023 9314912 9315039 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
128

1 Sequence Ontology Term