WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219668 Gene Name  anr-33
Sequence Name  ? E02C12.18 Organism  Caenorhabditis elegans
Automated Description  Is affected by hsf-1 based on RNA-seq studies. Is affected by CGP37157 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  V :2.01642± Length (nt)  ? 202
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219668

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:E02C12.18 E02C12.18 202   V: 9371733-9371934
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00043592
WBRNAi00012639
WBRNAi00030462

9 Allele

Public Name
gk963301
gk964351
gk962860
gk964052
gk963442
gk963441
gk456210
gk349955
gk383748

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219668 9371733 9371934 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 1 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
  Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
  Transcripts that showed significantly decreased expression in hsf-1(RNAi) animals comparing to in control animals, without heat shock. Transcripts that were differentially expressed in different conditions, compared to the hsf-1(+);-HS control, were determined with CuffDiff, which uses the Benjamini-Hochberg correction for multiple testing to obtain the q-value (the FDR-adjusted the p-value). WBPaper00049942:hsf-1(RNAi)_downregulated
  Transcripts that showed significantly increased expression after treated by 50uM CGP37157 (7-chloro-5-(2-chlorophenyl)-1,5-dihydro-4,1-benzothiazepin-2-one) for 5 days starting from young adult stage. DESeq fold change > 2, p-value < 0.05 WBPaper00061590:CGP37157_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219668 9371733 9371934 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
202

1 Sequence Ontology Term