WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B3.3b.1 Sequence Name  F25B3.3b.1
Length (nt)  2717   Chromosome Location  V: 9556027-9561674
Chromosome . Primary Identifier  V Chromosome Location . Start  9556027
Chromosome Location . End  9561674 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009100 rgef-1 F25B3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B3.3b F25B3.3b 1962   V: 9556716-9556830

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3b.1 9556027 9561674 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon192933   804   V: 9556027-9556830 Caenorhabditis elegans
Exon192934   129   V: 9557590-9557718 Caenorhabditis elegans
Exon192937   545   V: 9557993-9558537 Caenorhabditis elegans
Exon192939   259   V: 9558885-9559143 Caenorhabditis elegans
Exon192941   311   V: 9559211-9559521 Caenorhabditis elegans
Exon192943   81   V: 9559776-9559856 Caenorhabditis elegans
Exon192945   93   V: 9559915-9560007 Caenorhabditis elegans
Exon192947   55   V: 9560890-9560944 Caenorhabditis elegans
Exon192949   176   V: 9560994-9561169 Caenorhabditis elegans
Exon192952   116   V: 9561360-9561475 Caenorhabditis elegans
Exon192954   148   V: 9561527-9561674 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3b.1 9556027 9561674 -1

1 Sequence

Length
2717

1 Sequence Ontology Term

Identifier Name Description
transcript