WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B3.3a.1 Sequence Name  F25B3.3a.1
Length (nt)  2717   Chromosome Location  V: 9556027-9561671
Chromosome . Primary Identifier  V Chromosome Location . Start  9556027
Chromosome Location . End  9561671 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009100 rgef-1 F25B3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B3.3a F25B3.3a 1965   V: 9556716-9556830

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3a.1 9556027 9561671 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon192953   804   V: 9556027-9556830 Caenorhabditis elegans
Exon192956   132   V: 9557590-9557721 Caenorhabditis elegans
Exon192957   545   V: 9557993-9558537 Caenorhabditis elegans
Exon192959   259   V: 9558885-9559143 Caenorhabditis elegans
Exon192961   311   V: 9559211-9559521 Caenorhabditis elegans
Exon192963   81   V: 9559776-9559856 Caenorhabditis elegans
Exon192965   93   V: 9559915-9560007 Caenorhabditis elegans
Exon192967   55   V: 9560890-9560944 Caenorhabditis elegans
Exon192969   176   V: 9560994-9561169 Caenorhabditis elegans
Exon192972   116   V: 9561360-9561475 Caenorhabditis elegans
Exon192974   145   V: 9561527-9561671 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3a.1 9556027 9561671 -1

1 Sequence

Length
2717

1 Sequence Ontology Term

Identifier Name Description
transcript