WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B3.3b.1 Sequence Name  F25B3.3b.1
Length (nt)  2717   Chromosome Location  V: 9556027-9561674
Chromosome . Primary Identifier  V Chromosome Location . Start  9556027
Chromosome Location . End  9561674 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009100 rgef-1 F25B3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B3.3b F25B3.3b 1962   V: 9556716-9556830

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3b.1 9556027 9561674 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon192954   804   V: 9556027-9556830 Caenorhabditis elegans
Exon192955   129   V: 9557590-9557718 Caenorhabditis elegans
Exon192958   545   V: 9557993-9558537 Caenorhabditis elegans
Exon192960   259   V: 9558885-9559143 Caenorhabditis elegans
Exon192962   311   V: 9559211-9559521 Caenorhabditis elegans
Exon192964   81   V: 9559776-9559856 Caenorhabditis elegans
Exon192966   93   V: 9559915-9560007 Caenorhabditis elegans
Exon192968   55   V: 9560890-9560944 Caenorhabditis elegans
Exon192970   176   V: 9560994-9561169 Caenorhabditis elegans
Exon192973   116   V: 9561360-9561475 Caenorhabditis elegans
Exon192975   148   V: 9561527-9561674 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B3.3b.1 9556027 9561674 -1

1 Sequence

Length
2717

1 Sequence Ontology Term

Identifier Name Description
transcript