WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06E4.3a.2 Sequence Name  T06E4.3a.2
Length (nt)  7759   Chromosome Location  V: 9634849-9645595
Chromosome . Primary Identifier  V Chromosome Location . Start  9634849
Chromosome Location . End  9645595 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06E4.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06E4.3a T06E4.3a 7596   V: 9634980-9635177

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193152   329   V: 9634849-9635177 Caenorhabditis elegans
Exon193156   681   V: 9635226-9635906 Caenorhabditis elegans
Exon193159   126   V: 9635955-9636080 Caenorhabditis elegans
Exon193162   654   V: 9636339-9636992 Caenorhabditis elegans
Exon193165   1029   V: 9637172-9638200 Caenorhabditis elegans
Exon193168   132   V: 9638249-9638380 Caenorhabditis elegans
Exon193172   534   V: 9638428-9638961 Caenorhabditis elegans
Exon193174   304   V: 9640749-9641052 Caenorhabditis elegans
Exon193176   293   V: 9641101-9641393 Caenorhabditis elegans
Exon193178   211   V: 9641438-9641648 Caenorhabditis elegans
Exon193180   1323   V: 9641698-9643020 Caenorhabditis elegans
Exon193182   1079   V: 9643065-9644143 Caenorhabditis elegans
Exon193184   228   V: 9644191-9644418 Caenorhabditis elegans
Exon193186   483   V: 9644464-9644946 Caenorhabditis elegans
Exon193188   80   V: 9644995-9645074 Caenorhabditis elegans
Exon193190   65   V: 9645119-9645183 Caenorhabditis elegans
Exon193192   102   V: 9645232-9645333 Caenorhabditis elegans
Exon193193   84   V: 9645381-9645464 Caenorhabditis elegans
Exon193195   22   V: 9645574-9645595 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

1 Sequence

Length
7759

1 Sequence Ontology Term

Identifier Name Description
transcript