WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06E4.3a.2 Sequence Name  T06E4.3a.2
Length (nt)  7759   Chromosome Location  V: 9634849-9645595
Chromosome . Primary Identifier  V Chromosome Location . Start  9634849
Chromosome Location . End  9645595 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06E4.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06E4.3a T06E4.3a 7596   V: 9634980-9635177

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193173   329   V: 9634849-9635177 Caenorhabditis elegans
Exon193177   681   V: 9635226-9635906 Caenorhabditis elegans
Exon193180   126   V: 9635955-9636080 Caenorhabditis elegans
Exon193183   654   V: 9636339-9636992 Caenorhabditis elegans
Exon193186   1029   V: 9637172-9638200 Caenorhabditis elegans
Exon193189   132   V: 9638249-9638380 Caenorhabditis elegans
Exon193193   534   V: 9638428-9638961 Caenorhabditis elegans
Exon193195   304   V: 9640749-9641052 Caenorhabditis elegans
Exon193197   293   V: 9641101-9641393 Caenorhabditis elegans
Exon193199   211   V: 9641438-9641648 Caenorhabditis elegans
Exon193201   1323   V: 9641698-9643020 Caenorhabditis elegans
Exon193203   1079   V: 9643065-9644143 Caenorhabditis elegans
Exon193205   228   V: 9644191-9644418 Caenorhabditis elegans
Exon193207   483   V: 9644464-9644946 Caenorhabditis elegans
Exon193209   80   V: 9644995-9645074 Caenorhabditis elegans
Exon193211   65   V: 9645119-9645183 Caenorhabditis elegans
Exon193213   102   V: 9645232-9645333 Caenorhabditis elegans
Exon193214   84   V: 9645381-9645464 Caenorhabditis elegans
Exon193216   22   V: 9645574-9645595 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

1 Sequence

Length
7759

1 Sequence Ontology Term

Identifier Name Description
transcript