WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06E4.3a.2 Sequence Name  T06E4.3a.2
Length (nt)  7759   Chromosome Location  V: 9634849-9645595
Chromosome . Primary Identifier  V Chromosome Location . Start  9634849
Chromosome Location . End  9645595 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06E4.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06E4.3a T06E4.3a 7596   V: 9634980-9635177

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193207   329   V: 9634849-9635177 Caenorhabditis elegans
Exon193211   681   V: 9635226-9635906 Caenorhabditis elegans
Exon193214   126   V: 9635955-9636080 Caenorhabditis elegans
Exon193217   654   V: 9636339-9636992 Caenorhabditis elegans
Exon193220   1029   V: 9637172-9638200 Caenorhabditis elegans
Exon193223   132   V: 9638249-9638380 Caenorhabditis elegans
Exon193227   534   V: 9638428-9638961 Caenorhabditis elegans
Exon193229   304   V: 9640749-9641052 Caenorhabditis elegans
Exon193231   293   V: 9641101-9641393 Caenorhabditis elegans
Exon193233   211   V: 9641438-9641648 Caenorhabditis elegans
Exon193235   1323   V: 9641698-9643020 Caenorhabditis elegans
Exon193237   1079   V: 9643065-9644143 Caenorhabditis elegans
Exon193239   228   V: 9644191-9644418 Caenorhabditis elegans
Exon193241   483   V: 9644464-9644946 Caenorhabditis elegans
Exon193243   80   V: 9644995-9645074 Caenorhabditis elegans
Exon193245   65   V: 9645119-9645183 Caenorhabditis elegans
Exon193247   102   V: 9645232-9645333 Caenorhabditis elegans
Exon193248   84   V: 9645381-9645464 Caenorhabditis elegans
Exon193250   22   V: 9645574-9645595 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.2 9634849 9645595 -1

1 Sequence

Length
7759

1 Sequence Ontology Term

Identifier Name Description
transcript