WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06E4.3a.1 Sequence Name  T06E4.3a.1
Length (nt)  7735   Chromosome Location  V: 9634861-9645474
Chromosome . Primary Identifier  V Chromosome Location . Start  9634861
Chromosome Location . End  9645474 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06E4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000226 atl-1 T06E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06E4.3a T06E4.3a 7596   V: 9634980-9635177

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.1 9634861 9645474 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193208   317   V: 9634861-9635177 Caenorhabditis elegans
Exon193210   681   V: 9635226-9635906 Caenorhabditis elegans
Exon193213   126   V: 9635955-9636080 Caenorhabditis elegans
Exon193216   654   V: 9636339-9636992 Caenorhabditis elegans
Exon193219   1029   V: 9637172-9638200 Caenorhabditis elegans
Exon193222   132   V: 9638249-9638380 Caenorhabditis elegans
Exon193226   534   V: 9638428-9638961 Caenorhabditis elegans
Exon193228   304   V: 9640749-9641052 Caenorhabditis elegans
Exon193230   293   V: 9641101-9641393 Caenorhabditis elegans
Exon193232   211   V: 9641438-9641648 Caenorhabditis elegans
Exon193234   1323   V: 9641698-9643020 Caenorhabditis elegans
Exon193236   1079   V: 9643065-9644143 Caenorhabditis elegans
Exon193238   228   V: 9644191-9644418 Caenorhabditis elegans
Exon193240   483   V: 9644464-9644946 Caenorhabditis elegans
Exon193242   80   V: 9644995-9645074 Caenorhabditis elegans
Exon193244   65   V: 9645119-9645183 Caenorhabditis elegans
Exon193246   102   V: 9645232-9645333 Caenorhabditis elegans
Exon193249   94   V: 9645381-9645474 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T06E4.3a.1 9634861 9645474 -1

1 Sequence

Length
7735

1 Sequence Ontology Term

Identifier Name Description
transcript