WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9j.2 Sequence Name  R07B5.9j.2
Length (nt)  4296   Chromosome Location  V: 9846159-9853747
Chromosome . Primary Identifier  V Chromosome Location . Start  9846159
Chromosome Location . End  9853747 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9j.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9j R07B5.9j 3750   V: 9846598-9847140

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.2 9846159 9853747 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193760   982   V: 9846159-9847140 Caenorhabditis elegans
Exon193778   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193789   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193800   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193815   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193828   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193843   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193858   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193873   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193888   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193903   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193914   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193931   107   V: 9853641-9853747 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.2 9846159 9853747 -1

1 Sequence

Length
4296

1 Sequence Ontology Term

Identifier Name Description
transcript