WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9k.2 Sequence Name  R07B5.9k.2
Length (nt)  4332   Chromosome Location  V: 9846165-9853748
Chromosome . Primary Identifier  V Chromosome Location . Start  9846165
Chromosome Location . End  9853748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9k.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9k R07B5.9k 1545   V: 9850316-9850387

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9k.2 9846165 9853748 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193761   976   V: 9846165-9847140 Caenorhabditis elegans
Exon193779   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193790   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193801   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193816   181   V: 9850207-9850387 Caenorhabditis elegans
Exon193830   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193845   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193860   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193875   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193890   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193905   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193917   169   V: 9853371-9853539 Caenorhabditis elegans
Exon193932   108   V: 9853641-9853748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9k.2 9846165 9853748 -1

1 Sequence

Length
4332

1 Sequence Ontology Term

Identifier Name Description
transcript