WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9j.1 Sequence Name  R07B5.9j.1
Length (nt)  4389   Chromosome Location  V: 9846182-9856397
Chromosome . Primary Identifier  V Chromosome Location . Start  9846182
Chromosome Location . End  9856397 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9j R07B5.9j 3750   V: 9846598-9847140

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.1 9846182 9856397 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193762   959   V: 9846182-9847140 Caenorhabditis elegans
Exon193777   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193788   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193799   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193814   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193827   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193842   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193857   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193872   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193887   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193902   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193913   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193927   101   V: 9853641-9853741 Caenorhabditis elegans
Exon193939   122   V: 9856276-9856397 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.1 9846182 9856397 -1

1 Sequence

Length
4389

1 Sequence Ontology Term

Identifier Name Description
transcript