WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9a.1 Sequence Name  R07B5.9a.1
Length (nt)  3842   Chromosome Location  V: 9846598-9853741
Chromosome . Primary Identifier  V Chromosome Location . Start  9846598
Chromosome Location . End  9853741 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9a R07B5.9a 3741   V: 9846598-9847131

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.1 9846598 9853741 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193763   534   V: 9846598-9847131 Caenorhabditis elegans
Exon193769   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193780   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193791   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193806   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193817   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193832   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193847   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193862   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193877   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193892   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193907   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193918   101   V: 9853641-9853741 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.1 9846598 9853741 -1

1 Sequence

Length
3842

1 Sequence Ontology Term

Identifier Name Description
transcript