WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9j.2 Sequence Name  R07B5.9j.2
Length (nt)  4296   Chromosome Location  V: 9846159-9853747
Chromosome . Primary Identifier  V Chromosome Location . Start  9846159
Chromosome Location . End  9853747 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9j.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9j R07B5.9j 3750   V: 9846598-9847140

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.2 9846159 9853747 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193815   982   V: 9846159-9847140 Caenorhabditis elegans
Exon193833   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193844   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193855   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193870   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193883   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193898   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193913   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193928   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193943   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193958   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193969   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193986   107   V: 9853641-9853747 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9j.2 9846159 9853747 -1

1 Sequence

Length
4296

1 Sequence Ontology Term

Identifier Name Description
transcript