WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9a.1 Sequence Name  R07B5.9a.1
Length (nt)  3842   Chromosome Location  V: 9846598-9853741
Chromosome . Primary Identifier  V Chromosome Location . Start  9846598
Chromosome Location . End  9853741 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9a R07B5.9a 3741   V: 9846598-9847131

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.1 9846598 9853741 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193818   534   V: 9846598-9847131 Caenorhabditis elegans
Exon193824   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193835   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193846   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193861   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193872   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193887   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193902   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193917   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193932   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193947   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193962   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193973   101   V: 9853641-9853741 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.1 9846598 9853741 -1

1 Sequence

Length
3842

1 Sequence Ontology Term

Identifier Name Description
transcript