WormMine: Gene WBGene00077498

• WormBase Gene ID: WBGene00077498
• Gene Name: R07B5.10
• Sequence Name: R07B5.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including clk-1; dlc-1; and ogt-1 based on microarray and RNA-seq studies. Is affected by rifampin and allantoin based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 131

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00077498

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

7 Allele

• gk963301
• gk964351
• gk962860
• gk964304
• gk963572
• gk964400
• gk963573

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00077498
• Start: 9854200
• End: 9854330
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin-Allantoin_upregulated
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin_upregulated
	Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:eat-2(ad1116)_downregulated
	Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2.	Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off.	WBPaper00045774:clk-1_downregulated
	Transcripts that interact with 3xFLAG-DLC-1 as identified by immunoprecipitation followed by RNA sequencing.	DESeq2, fold change > 2,, p-value < 0.01	WBPaper00055334:DLC-1_interacting
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly decreased expression in adbp-1(qj1) comparing to in N2 animals at embryo stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00067079:adbp-1(qj1)_downregulated_embryo
	Transcripts that showed significantly decreased expression in BB21 adr-1(tm668);adr-2(ok735) comparing to in N2 animals at embryo stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00067079:adr-1(tm668);adr-2(ok735)_downregulated_embryo

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00077498
• Start: 9854200
• End: 9854330
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 131

1 Sequence Ontology Term