WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T11A5.6a.1 Sequence Name  T11A5.6a.1
Length (nt)  2396   Chromosome Location  V: 9882037-9885960
Chromosome . Primary Identifier  V Chromosome Location . Start  9882037
Chromosome Location . End  9885960 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T11A5.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011705 clp-9 T11A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T11A5.6a T11A5.6a 2157   V: 9882276-9882413

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T11A5.6a.1 9882037 9885960 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon194059   377   V: 9882037-9882413 Caenorhabditis elegans
Exon194061   148   V: 9882469-9882616 Caenorhabditis elegans
Exon194064   398   V: 9882669-9883066 Caenorhabditis elegans
Exon194067   463   V: 9883186-9883648 Caenorhabditis elegans
Exon194070   291   V: 9883698-9883988 Caenorhabditis elegans
Exon194073   327   V: 9884030-9884356 Caenorhabditis elegans
Exon194076   103   V: 9885040-9885142 Caenorhabditis elegans
Exon194080   53   V: 9885567-9885619 Caenorhabditis elegans
Exon194083   88   V: 9885677-9885764 Caenorhabditis elegans
Exon194087   148   V: 9885813-9885960 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T11A5.6a.1 9882037 9885960 -1

1 Sequence

Length
2396

1 Sequence Ontology Term

Identifier Name Description
transcript