WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50H2.2a.1 Sequence Name  C50H2.2a.1
Length (nt)  1729   Chromosome Location  V: 9899578-9907647
Chromosome . Primary Identifier  V Chromosome Location . Start  9899578
Chromosome Location . End  9907647 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50H2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001211 egl-47 C50H2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50H2.2a C50H2.2a 1569   V: 9899587-9899709

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50H2.2a.1 9899578 9907647 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon194064   132   V: 9899578-9899709 Caenorhabditis elegans
Exon194065   179   V: 9900734-9900912 Caenorhabditis elegans
Exon194068   121   V: 9905381-9905501 Caenorhabditis elegans
Exon194070   93   V: 9905548-9905640 Caenorhabditis elegans
Exon194072   126   V: 9905684-9905809 Caenorhabditis elegans
Exon194076   470   V: 9906391-9906860 Caenorhabditis elegans
Exon194078   163   V: 9906909-9907071 Caenorhabditis elegans
Exon194080   162   V: 9907157-9907318 Caenorhabditis elegans
Exon194083   283   V: 9907365-9907647 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50H2.2a.1 9899578 9907647 1

1 Sequence

Length
1729

1 Sequence Ontology Term

Identifier Name Description
transcript