WormMine: Gene WBGene00005620

• WormBase Gene ID: WBGene00005620
• Gene Name: srj-35
• Sequence Name: T07C12.3
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in g2L; mc3; and pharyngeal gland cell based on single-cell RNA-seq studies. Is affected by hpl-2 and swsn-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :2.21365 ±0.000408
• Length (nt): 2967

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005620

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

49 Allele

• gk963301
• gk964351
• gk962860
• gk964304
• gk963572
• gk964400
• gk963573
• tm10659
• WBVar01863993
• WBVar01863994
• WBVar01863992
• WBVar01863997
• WBVar01863998
• WBVar01863995
• WBVar01863996
• WBVar01863999
• gk964497
• tm11196
• tm10618
• gk244376
• gk244374
• gk244375
• gk244373
• gk244377
• cxTi6028
• WBVar00213922
• WBVar01742894
• WBVar01742895
• gk903237
• gk703489

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005620
• Start: 9932254
• End: 9935220
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in hpl-2(tm1489) comparing to in N2 animals.	DESeq2, adjusted p-value < 0.05, log2 fold change > 2 or < -2.	WBPaper00054493:hpl-2(tm1489)_downregulated
	Genes that were not enriched in either spermatogenic fem-3(q96gf) nor oogenic fog-2(q71) gonads, according to RNAseq analysis.	To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.	WBPaper00045521:Gender_Neutral
	Transcripts that showed significantly increased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms.	DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.)	WBPaper00060764:swsn-1(os22ts)_upregulated
	Single-cell RNA-Seq cell group 78_0 expressed in gland.	scVI 0.6.0	WBPaper00065841:78_0
	Single-cell RNA-Seq cell group 41_0 expressed in gland.	scVI 0.6.0	WBPaper00065841:41_0
	Single-cell RNA-Seq cell group 41_1 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:41_1
	Single-cell RNA-Seq cell group 41_2 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:41_2

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005620
• Start: 9932254
• End: 9935220
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2967

1 Sequence Ontology Term