WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196644 Gene Name  K08H10.15
Sequence Name  ? K08H10.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by hmg-3 and daf-2 based on RNA-seq and microarray studies. Is affected by 4-bromodiphenyl ether and Tunicamycin based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 297
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196644

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K08H10.15 K08H10.15 297   V: 10019997-10020293
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk963301
gk964351
gk962860
gk964304
gk963572
gk964400
gk963573
gk244593
gk244591
gk244592
gk361167
gk375920

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196644 10019997 10020293 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-2(e1370)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-16(mu86)_upregulated_neuron
  Transcripts that showed significantly increased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_upregulated
  Transcripts that showed significantly decreased expression after 8 hour exposure to 10ug per ml or 30ug per ml 4-bromodiphenyl ether (BDE-3) at L4 larva stage. t-test, fold change >= 2, p-value < 0.05. WBPaper00051021:4-bromodiphenyl-ether_downregulated
  Transcripts that interact with HMG-3-HA in BAT1753 [hmg-3(bar24[hmg-3-3xHA]) I] at L4 larva stage. N.A. WBPaper00055013:HMG-3_interacting_transcript

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196644 10019997 10020293 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
297

1 Sequence Ontology Term