WormMine: Gene WBGene00219572

• WormBase Gene ID: WBGene00219572
• Gene Name: linc-146
• Sequence Name: C51E3.13
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AVJL; AVK; RIML; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by ogt-1 and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: V :2.30099±
• Length (nt): 3032

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219572

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C51E3.13	C51E3.13	479	V: 10176233-10179264

Other

0 CDSs

0 RNAi Result

40 Allele

• gk963301
• gk963495
• gk963496
• WBVar02060675
• WBVar02060676
• gk964351
• gk962860
• gk964304
• gk963868
• WBVar01864445
• WBVar01864448
• WBVar01864446
• WBVar01864447
• WBVar01974595
• gk244879
• WBVar02024218
• gk244880
• gk244877
• gk244878
• gk244876
• WBVar02072529
• gk853069
• h4352
• WBVar01461404
• WBVar01461403
• gk752241
• gk853765
• gk491649
• gk756307
• gk537733

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219572
• Start: 10176233
• End: 10179264
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_10179265..10179534
• Length (nt): 270
• Chromosome Location: V: 10179265-10179534
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
Bacteria infection: Pseudomonas aeruginosa PA14. 24 hours of exposure.	Small RNAs (21-26nt) that showed significantly increased expression after L4 animals were exposed to P .aeruginosa strain PA14 for 24 hours.	DESeq2, FDR < 0.05	WBPaper00056868:P.aeruginosa_upregulated_smallRNA
	Single-cell RNA-Seq cell group 120_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:120_0
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.	edgeR, FDR < 0.001, fold change > 2.	WBPaper00055565:AVK_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219572
• Start: 10176233
• End: 10179264
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 3032

1 Sequence Ontology Term